GeNL oxygen sensor AAV
AAVs for our genetically encoded oxygen sensor GeNL are available at the Zurich Viral Vector Core Facility under ID v1050. Construct: ssAAV-{capsid}/2-hGFAP-GeNL-WPRE-bGHp(A)
Order at VVF Zurich (ID: v1050)Open science
Reagents, software, and analysis tools from our lab.
Viral vectors
AAVs for our genetically encoded oxygen sensor GeNL are available at the Zurich Viral Vector Core Facility under ID v1050. Construct: ssAAV-{capsid}/2-hGFAP-GeNL-WPRE-bGHp(A)
Order at VVF Zurich (ID: v1050)Software
MATLAB analysis pipeline for detecting and quantifying oxygen sinks (“hypoxic pockets”) and oxygen surges from in vivo bioluminescence oxygen imaging. Includes a stepwise GUI, event-based and recording-level hypoxic-burden metrics, vascular-distance analysis, and integration with behavioral data — a major revision of the software released with the Science 2024 paper.
github.com/drfelixb/OxygenDynamicsV2 · Release v3.0The original analysis code published alongside the Science 2024 paper on hypoxic pockets in the mouse cerebral cortex, archived on Zenodo.
Asiminas, Temp2Spec/OxygenDynamics_Public: Science_2024 · Zenodo (2024)Open to prospective students, collaborations, and media inquiries.