GeNL oxygen sensor AAV
AAVs for our genetically encoded oxygen sensor GeNL are available at the Zurich Viral Vector Core Facility under ID v1050. Construct: ssAAV-{capsid}/2-hGFAP-GeNL-WPRE-bGHp(A)
Order at VVF Zurich (ID: v1050)Resources
Reagents, software, and analysis tools from my group.
AAV constructs
Analysis tools
OxygenDynamics — hypoxic pocket detection (v3.0)
MATLAB analysis pipeline for detecting and quantifying oxygen sinks (“hypoxic pockets”) and oxygen surges from in vivo bioluminescence oxygen imaging. Includes a stepwise GUI, event-based and recording-level hypoxic-burden metrics, vascular-distance analysis, and integration with behavioral data — a major revision of the software released with the Science 2024 paper.
Download v3.0 on GitHubOxygenDynamics — Science 2024 release (archived)
The original analysis code published alongside the Science 2024 paper on hypoxic pockets in the mouse cerebral cortex. Citation: Asiminas A. Temp2Spec/OxygenDynamics_Public: Science_2024. Zenodo, 2024. doi:10.5281/zenodo.10629901
View the archive on ZenodoInterested in working together?
I'm open to student projects, collaborations and media inquiries.